Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Gm42471-201ENSMUST00000201457 1865 ntBASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Smc1aQ9CU62 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Gm11543-201ENSMUST00000120758 370 ntBASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Arhgef33-209ENSMUST00000225223 714 ntBASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Smc1aQ9CU62 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Smc1aQ9CU62 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC15.87■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms