Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Gm4459-201ENSMUST00000118750 468 ntBASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Gm15794-201ENSMUST00000120182 631 ntBASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Gm6345-202ENSMUST00000180900 204 ntBASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Gm18041-201ENSMUST00000218210 618 ntBASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
RTRAFQ9CQE8 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Gm12626-201ENSMUST00000117339 1983 ntBASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Gm12623-201ENSMUST00000119849 1983 ntBASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
RTRAFQ9CQE8 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Trav13-3-201ENSMUST00000117226 336 ntBASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Gm8655-201ENSMUST00000221159 852 ntBASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
RTRAFQ9CQE8 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Gm15165-201ENSMUST00000118140 502 ntBASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC11.51□□□□□ -0.57
RTRAFQ9CQE8 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC11.51□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms