Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
Col11a1Q61245 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC15.57■□□□□ 0.08
Col11a1Q61245 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Col11a1Q61245 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Mir698-201ENSMUST00000102164 109 ntBASIC15.57■□□□□ 0.08
Col11a1Q61245 Gm24255-201ENSMUST00000104481 128 ntBASIC15.57■□□□□ 0.08
Col11a1Q61245 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC15.57■□□□□ 0.08
Col11a1Q61245 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC15.57■□□□□ 0.08
Col11a1Q61245 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
Col11a1Q61245 Gm21769-201ENSMUST00000211922 111 ntBASIC15.57■□□□□ 0.08
Col11a1Q61245 Gm8227-201ENSMUST00000223306 571 ntBASIC15.57■□□□□ 0.08
Col11a1Q61245 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC15.57■□□□□ 0.08
Col11a1Q61245 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col11a1Q61245 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Col11a1Q61245 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.56■□□□□ 0.08
Col11a1Q61245 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Col11a1Q61245 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Col11a1Q61245 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
Col11a1Q61245 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC15.56■□□□□ 0.08
Col11a1Q61245 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC15.56■□□□□ 0.08
Col11a1Q61245 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 AC131690.1-201ENSMUST00000218406 374 ntBASIC15.56■□□□□ 0.08
Col11a1Q61245 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col11a1Q61245 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 CT030182.1-201ENSMUST00000225935 533 ntBASIC15.55■□□□□ 0.08
Col11a1Q61245 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
Col11a1Q61245 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col11a1Q61245 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Col11a1Q61245 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
Col11a1Q61245 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Gm45186-201ENSMUST00000206874 478 ntBASIC15.54■□□□□ 0.08
Col11a1Q61245 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC15.54■□□□□ 0.08
Col11a1Q61245 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Col11a1Q61245 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Col11a1Q61245 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Col11a1Q61245 Gm6159-201ENSMUST00000191249 1724 ntBASIC15.54■□□□□ 0.08
Col11a1Q61245 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Gm11964-201ENSMUST00000120982 444 ntBASIC15.54■□□□□ 0.08
Col11a1Q61245 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC15.54■□□□□ 0.08
Col11a1Q61245 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Gm4819-201ENSMUST00000182170 1009 ntBASIC15.54■□□□□ 0.08
Col11a1Q61245 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC15.54■□□□□ 0.08
Col11a1Q61245 AC134254.1-201ENSMUST00000221362 167 ntBASIC15.54■□□□□ 0.08
Col11a1Q61245 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.54■□□□□ 0.08
Col11a1Q61245 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col11a1Q61245 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col11a1Q61245 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col11a1Q61245 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms