Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Gm9682-201ENSMUST00000197505 556 ntBASIC13.32□□□□□ -0.28
Trim40Q3UWA4 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Spr-ps1-201ENSMUST00000089584 605 ntBASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 AC154262.2-201ENSMUST00000224310 2293 ntBASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trim40Q3UWA4 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Gm6159-201ENSMUST00000191249 1724 ntBASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Gm14371-201ENSMUST00000138925 1518 ntBASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Olfr286-202ENSMUST00000205305 969 ntBASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trim40Q3UWA4 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Ank2-226ENSMUST00000189368 339 ntBASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Gm43347-201ENSMUST00000200226 580 ntBASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Gm18041-201ENSMUST00000218210 618 ntBASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Gm9252-201ENSMUST00000172364 1602 ntBASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim40Q3UWA4 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms