Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Gm14701-201ENSMUST00000117156 348 ntBASIC13.79□□□□□ -0.2
Col28a1Q2UY11 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Gm45167-201ENSMUST00000208007 322 ntBASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Gm12626-201ENSMUST00000117339 1983 ntBASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Gm12623-201ENSMUST00000119849 1983 ntBASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Gm5639-201ENSMUST00000122305 2403 ntBASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col28a1Q2UY11 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Col28a1Q2UY11 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col28a1Q2UY11 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Col28a1Q2UY11 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col28a1Q2UY11 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col28a1Q2UY11 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col28a1Q2UY11 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Gm17271-201ENSMUST00000165535 355 ntBASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Gm27300-201ENSMUST00000184085 97 ntBASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Gm27335-201ENSMUST00000184758 97 ntBASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Olfr286-202ENSMUST00000205305 969 ntBASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Col28a1Q2UY11 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms