Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm43548-201ENSMUST00000197139 2353 ntBASIC21.35■■□□□ 1.01
Col17a1Q07563 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col17a1Q07563 Gm20628-201ENSMUST00000177363 3215 ntBASIC21.35■■□□□ 1.01
Col17a1Q07563 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col17a1Q07563 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col17a1Q07563 Gm13996-201ENSMUST00000118456 430 ntBASIC21.34■■□□□ 1.01
Col17a1Q07563 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
Col17a1Q07563 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC21.34■■□□□ 1.01
Col17a1Q07563 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC21.34■■□□□ 1.01
Col17a1Q07563 Gm8856-201ENSMUST00000185254 1144 ntBASIC21.34■■□□□ 1.01
Col17a1Q07563 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC21.34■■□□□ 1.01
Col17a1Q07563 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col17a1Q07563 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col17a1Q07563 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Col17a1Q07563 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col17a1Q07563 Gm21009-201ENSMUST00000197169 1669 ntBASIC21.34■■□□□ 1.01
Col17a1Q07563 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col17a1Q07563 Gm9347-201ENSMUST00000211473 1607 ntBASIC21.34■■□□□ 1.01
Col17a1Q07563 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col17a1Q07563 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col17a1Q07563 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC21.33■■□□□ 1.01
Col17a1Q07563 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Col17a1Q07563 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC21.33■■□□□ 1.01
Col17a1Q07563 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Col17a1Q07563 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Col17a1Q07563 Gm18730-201ENSMUST00000218038 343 ntBASIC21.33■■□□□ 1.01
Col17a1Q07563 Gm17870-201ENSMUST00000219489 1174 ntBASIC21.33■■□□□ 1.01
Col17a1Q07563 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col17a1Q07563 Gm8894-201ENSMUST00000074642 666 ntBASIC21.33■■□□□ 1.01
Col17a1Q07563 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col17a1Q07563 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col17a1Q07563 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col17a1Q07563 AC091458.1-201ENSMUST00000220902 1361 ntBASIC21.33■■□□□ 1
Col17a1Q07563 Gm5049-201ENSMUST00000195878 1590 ntBASIC21.33■■□□□ 1
Col17a1Q07563 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC21.33■■□□□ 1
Col17a1Q07563 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Col17a1Q07563 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Col17a1Q07563 Ccdc166-201ENSMUST00000182172 2584 ntBASIC21.33■■□□□ 1
Col17a1Q07563 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Col17a1Q07563 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC21.33■■□□□ 1
Col17a1Q07563 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Col17a1Q07563 Gm11637-201ENSMUST00000120601 592 ntBASIC21.32■■□□□ 1
Col17a1Q07563 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC21.32■■□□□ 1
Col17a1Q07563 Gm17391-201ENSMUST00000171036 126 ntBASIC21.32■■□□□ 1
Col17a1Q07563 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC21.32■■□□□ 1
Col17a1Q07563 Gm7902-201ENSMUST00000198842 947 ntBASIC21.32■■□□□ 1
Col17a1Q07563 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC21.32■■□□□ 1
Col17a1Q07563 Gm3318-201ENSMUST00000217604 1183 ntBASIC21.32■■□□□ 1
Col17a1Q07563 Gm17330-201ENSMUST00000221047 165 ntBASIC21.32■■□□□ 1
Col17a1Q07563 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Gm14608-201ENSMUST00000120030 1553 ntBASIC21.32■■□□□ 1
Col17a1Q07563 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC21.32■■□□□ 1
Col17a1Q07563 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC21.32■■□□□ 1
Col17a1Q07563 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
Col17a1Q07563 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Col17a1Q07563 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Gm14460-201ENSMUST00000121511 639 ntBASIC21.32■■□□□ 1
Col17a1Q07563 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Gm19166-201ENSMUST00000196041 1063 ntBASIC21.32■■□□□ 1
Col17a1Q07563 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 Gm16372-201ENSMUST00000073088 450 ntBASIC21.32■■□□□ 1
Col17a1Q07563 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col17a1Q07563 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Gm10040-201ENSMUST00000080726 1662 ntBASIC21.31■■□□□ 1
Col17a1Q07563 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC21.31■■□□□ 1
Col17a1Q07563 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC21.31■■□□□ 1
Col17a1Q07563 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
Col17a1Q07563 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC21.31■■□□□ 1
Col17a1Q07563 Gm5950-201ENSMUST00000213337 772 ntBASIC21.31■■□□□ 1
Col17a1Q07563 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC21.31■■□□□ 1
Col17a1Q07563 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col17a1Q07563 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Col17a1Q07563 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Col17a1Q07563 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Col17a1Q07563 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col17a1Q07563 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC21.3■■□□□ 1
Col17a1Q07563 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC21.3■■□□□ 1
Col17a1Q07563 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC21.3■■□□□ 1
Col17a1Q07563 Rmrp-201ENSMUST00000157463 271 ntBASIC21.3■■□□□ 1
Col17a1Q07563 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms