Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Gm12882-201ENSMUST00000121696 517 ntBASIC12.25□□□□□ -0.45
Nkx3-1P97436 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 AC154806.6-201ENSMUST00000228192 202 ntBASIC12.25□□□□□ -0.45
Nkx3-1P97436 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Nkx3-1P97436 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Gm5354-201ENSMUST00000182417 973 ntBASIC12.24□□□□□ -0.45
Nkx3-1P97436 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Gm21470-201ENSMUST00000187680 696 ntBASIC12.24□□□□□ -0.45
Nkx3-1P97436 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Nkx3-1P97436 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.23□□□□□ -0.45
Nkx3-1P97436 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Gm15957-201ENSMUST00000118893 974 ntBASIC12.23□□□□□ -0.45
Nkx3-1P97436 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC12.23□□□□□ -0.45
Nkx3-1P97436 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.23□□□□□ -0.45
Nkx3-1P97436 AC159006.1-201ENSMUST00000226396 258 ntBASIC12.23□□□□□ -0.45
Nkx3-1P97436 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Nkx3-1P97436 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Nkx3-1P97436 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms