Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
Smc1aQ9CU62 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
Smc1aQ9CU62 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Smc1aQ9CU62 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Smc1aQ9CU62 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Smc1aQ9CU62 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Smc1aQ9CU62 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Smc1aQ9CU62 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Smc1aQ9CU62 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Smc1aQ9CU62 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Gm6973-201ENSMUST00000117080 721 ntBASIC15.93■□□□□ 0.14
Smc1aQ9CU62 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Gm5779-201ENSMUST00000218467 910 ntBASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Gm5626-201ENSMUST00000222151 1058 ntBASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Smc1aQ9CU62 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Mir6977-201ENSMUST00000184960 64 ntBASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Smc1aQ9CU62 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Gm12428-201ENSMUST00000119844 727 ntBASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Gm18737-201ENSMUST00000173594 937 ntBASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 AC166341.4-201ENSMUST00000220625 123 ntBASIC15.91■□□□□ 0.14
Smc1aQ9CU62 CT025535.1-201ENSMUST00000227172 491 ntBASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Smc1aQ9CU62 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms