Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.34□□□□□ -0.11
Cdk9Q99J95 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC14.34□□□□□ -0.11
Cdk9Q99J95 Gm37153-201ENSMUST00000193637 231 ntBASIC14.34□□□□□ -0.11
Cdk9Q99J95 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.34□□□□□ -0.11
Cdk9Q99J95 AC161829.1-201ENSMUST00000220298 281 ntBASIC14.34□□□□□ -0.11
Cdk9Q99J95 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.34□□□□□ -0.11
Cdk9Q99J95 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.34□□□□□ -0.11
Cdk9Q99J95 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC14.34□□□□□ -0.11
Cdk9Q99J95 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Cdk9Q99J95 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Gm7862-201ENSMUST00000121461 292 ntBASIC14.33□□□□□ -0.12
Cdk9Q99J95 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdk9Q99J95 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cdk9Q99J95 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cdk9Q99J95 AC130669.1-201ENSMUST00000228537 1672 ntBASIC14.33□□□□□ -0.12
Cdk9Q99J95 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Gm9726-201ENSMUST00000180321 678 ntBASIC14.32□□□□□ -0.12
Cdk9Q99J95 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Mmp14-206ENSMUST00000225641 3238 ntBASIC14.32□□□□□ -0.12
Cdk9Q99J95 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cdk9Q99J95 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.31□□□□□ -0.12
Cdk9Q99J95 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdk9Q99J95 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdk9Q99J95 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Cdk9Q99J95 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Cdk9Q99J95 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdk9Q99J95 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdk9Q99J95 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.31□□□□□ -0.12
Cdk9Q99J95 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdk9Q99J95 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Cdk9Q99J95 Il17rd-203ENSMUST00000225146 3366 ntBASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms