Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Gm15376-201ENSMUST00000122258 783 ntBASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC19.41■□□□□ 0.7
Usp40Q8BWR4 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Gm37411-201ENSMUST00000194180 2282 ntBASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Gm5912-201ENSMUST00000122282 1438 ntBASIC19.41■□□□□ 0.7
Usp40Q8BWR4 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp40Q8BWR4 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Mir7085-201ENSMUST00000184353 66 ntBASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp40Q8BWR4 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
Usp40Q8BWR4 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Usp40Q8BWR4 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Usp40Q8BWR4 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Usp40Q8BWR4 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC19.39■□□□□ 0.7
Usp40Q8BWR4 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 AC162938.1-201ENSMUST00000213140 2323 ntBASIC19.39■□□□□ 0.69
Usp40Q8BWR4 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Gm6266-201ENSMUST00000203844 806 ntBASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC19.39■□□□□ 0.69
Usp40Q8BWR4 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Gm11524-201ENSMUST00000119349 807 ntBASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Fbxl12-205ENSMUST00000140702 1555 ntBASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Gm24420-201ENSMUST00000176676 59 ntBASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Gm2495-201ENSMUST00000191160 466 ntBASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 80.2 ms