Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Gm38058-201ENSMUST00000194323 4368 ntBASIC16.76■□□□□ 0.27
Trim56Q80VI1 Gm15321-201ENSMUST00000121290 288 ntBASIC16.76■□□□□ 0.27
Trim56Q80VI1 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Gm27838-201ENSMUST00000184829 128 ntBASIC16.76■□□□□ 0.27
Trim56Q80VI1 Gm5626-201ENSMUST00000222151 1058 ntBASIC16.76■□□□□ 0.27
Trim56Q80VI1 AC154806.6-201ENSMUST00000228192 202 ntBASIC16.76■□□□□ 0.27
Trim56Q80VI1 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Syt7-204ENSMUST00000223586 1344 ntBASIC16.75■□□□□ 0.27
Trim56Q80VI1 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim56Q80VI1 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Gm37714-201ENSMUST00000194742 342 ntBASIC16.74■□□□□ 0.27
Trim56Q80VI1 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC16.74■□□□□ 0.27
Trim56Q80VI1 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC16.74■□□□□ 0.27
Trim56Q80VI1 AC126549.2-201ENSMUST00000223997 1976 ntBASIC16.74■□□□□ 0.27
Trim56Q80VI1 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim56Q80VI1 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC16.73■□□□□ 0.27
Trim56Q80VI1 AC153872.1-201ENSMUST00000199539 128 ntBASIC16.73■□□□□ 0.27
Trim56Q80VI1 Gm2423-201ENSMUST00000074863 733 ntBASIC16.73■□□□□ 0.27
Trim56Q80VI1 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Gm9347-201ENSMUST00000211473 1607 ntBASIC16.73■□□□□ 0.27
Trim56Q80VI1 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms