Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC17.46■□□□□ 0.39
Trim27Q62158 AC139350.3-201ENSMUST00000226151 420 ntBASIC17.46■□□□□ 0.39
Trim27Q62158 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim27Q62158 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim27Q62158 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC17.46■□□□□ 0.39
Trim27Q62158 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim27Q62158 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim27Q62158 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
Trim27Q62158 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim27Q62158 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
Trim27Q62158 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
Trim27Q62158 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Trim27Q62158 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
Trim27Q62158 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Trim27Q62158 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Trim27Q62158 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Gm27622-201ENSMUST00000183779 60 ntBASIC17.45■□□□□ 0.38
Trim27Q62158 Gm27533-201ENSMUST00000183800 152 ntBASIC17.45■□□□□ 0.38
Trim27Q62158 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Ighv8-14-201ENSMUST00000196781 358 ntBASIC17.45■□□□□ 0.38
Trim27Q62158 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC17.45■□□□□ 0.38
Trim27Q62158 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trim27Q62158 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC17.45■□□□□ 0.38
Trim27Q62158 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Trim27Q62158 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim27Q62158 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Trim27Q62158 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC17.44■□□□□ 0.38
Trim27Q62158 AA543401-201ENSMUST00000164248 1269 ntBASIC17.44■□□□□ 0.38
Trim27Q62158 Shd-206ENSMUST00000225145 998 ntBASIC17.44■□□□□ 0.38
Trim27Q62158 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim27Q62158 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC17.43■□□□□ 0.38
Trim27Q62158 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Trim27Q62158 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Gm44291-201ENSMUST00000203102 2865 ntBASIC17.43■□□□□ 0.38
Trim27Q62158 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC17.43■□□□□ 0.38
Trim27Q62158 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Trim27Q62158 Gm27618-201ENSMUST00000183671 60 ntBASIC17.43■□□□□ 0.38
Trim27Q62158 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Trim27Q62158 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Trim27Q62158 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
Trim27Q62158 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.43■□□□□ 0.38
Trim27Q62158 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC17.43■□□□□ 0.38
Trim27Q62158 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim27Q62158 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC17.43■□□□□ 0.38
Trim27Q62158 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Gm15889-202ENSMUST00000212669 2443 ntBASIC17.42■□□□□ 0.38
Trim27Q62158 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim27Q62158 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
Trim27Q62158 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Trim27Q62158 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Mir1897-201ENSMUST00000122581 272 ntBASIC17.42■□□□□ 0.38
Trim27Q62158 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim27Q62158 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC17.42■□□□□ 0.38
Trim27Q62158 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC17.42■□□□□ 0.38
Trim27Q62158 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms