Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC16.75■□□□□ 0.27
Limch1Q3UH68 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Gm10275-202ENSMUST00000168697 495 ntBASIC16.75■□□□□ 0.27
Limch1Q3UH68 Gm27437-201ENSMUST00000183429 107 ntBASIC16.75■□□□□ 0.27
Limch1Q3UH68 Gm38225-201ENSMUST00000194001 393 ntBASIC16.75■□□□□ 0.27
Limch1Q3UH68 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 AC125206.2-201ENSMUST00000217454 574 ntBASIC16.75■□□□□ 0.27
Limch1Q3UH68 Gm10275-201ENSMUST00000092620 635 ntBASIC16.75■□□□□ 0.27
Limch1Q3UH68 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC16.75■□□□□ 0.27
Limch1Q3UH68 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Limch1Q3UH68 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Gm27306-201ENSMUST00000183970 107 ntBASIC16.74■□□□□ 0.27
Limch1Q3UH68 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC16.74■□□□□ 0.27
Limch1Q3UH68 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 AC102291.3-201ENSMUST00000226566 405 ntBASIC16.74■□□□□ 0.27
Limch1Q3UH68 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Limch1Q3UH68 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Limch1Q3UH68 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Gm12151-201ENSMUST00000121374 290 ntBASIC16.73■□□□□ 0.27
Limch1Q3UH68 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Gm37411-201ENSMUST00000194180 2282 ntBASIC16.73■□□□□ 0.27
Limch1Q3UH68 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Gm13517-201ENSMUST00000120782 1495 ntBASIC16.73■□□□□ 0.27
Limch1Q3UH68 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Limch1Q3UH68 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
Limch1Q3UH68 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Limch1Q3UH68 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 56.2 ms