Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC13.91□□□□□ -0.18
Col9a1Q05722 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC13.91□□□□□ -0.18
Col9a1Q05722 Gm45098-201ENSMUST00000207179 657 ntBASIC13.91□□□□□ -0.18
Col9a1Q05722 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC13.91□□□□□ -0.18
Col9a1Q05722 Olfr838-ps1-201ENSMUST00000211872 977 ntBASIC13.91□□□□□ -0.18
Col9a1Q05722 Gm36278-201ENSMUST00000217030 918 ntTSL 5 BASIC13.91□□□□□ -0.18
Col9a1Q05722 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC13.91□□□□□ -0.18
Col9a1Q05722 Hprt-201ENSMUST00000026723 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Tceal9-201ENSMUST00000048687 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC13.91□□□□□ -0.18
Col9a1Q05722 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC13.91□□□□□ -0.18
Col9a1Q05722 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Ankra2-208ENSMUST00000226100 1476 ntBASIC13.91□□□□□ -0.18
Col9a1Q05722 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Col9a1Q05722 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC13.91□□□□□ -0.18
Col9a1Q05722 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC13.91□□□□□ -0.18
Col9a1Q05722 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col9a1Q05722 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Col9a1Q05722 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Col9a1Q05722 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC13.9□□□□□ -0.18
Col9a1Q05722 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Col9a1Q05722 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC13.9□□□□□ -0.18
Col9a1Q05722 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC13.9□□□□□ -0.18
Col9a1Q05722 Vmn1r3-201ENSMUST00000105159 1011 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Col9a1Q05722 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Gm4986-201ENSMUST00000119731 549 ntBASIC13.9□□□□□ -0.18
Col9a1Q05722 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
Col9a1Q05722 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Col9a1Q05722 Gm6312-201ENSMUST00000204060 1194 ntBASIC13.9□□□□□ -0.18
Col9a1Q05722 Gm44985-201ENSMUST00000206202 1016 ntBASIC13.9□□□□□ -0.18
Col9a1Q05722 Gm19078-201ENSMUST00000206311 727 ntBASIC13.9□□□□□ -0.18
Col9a1Q05722 Gm34272-201ENSMUST00000208886 253 ntBASIC13.9□□□□□ -0.18
Col9a1Q05722 4930584E12Rik-201ENSMUST00000216646 981 ntBASIC13.9□□□□□ -0.18
Col9a1Q05722 Gm18730-201ENSMUST00000218038 343 ntBASIC13.9□□□□□ -0.18
Col9a1Q05722 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC13.9□□□□□ -0.18
Col9a1Q05722 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Col9a1Q05722 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col9a1Q05722 Gm8242-201ENSMUST00000193029 1420 ntBASIC13.9□□□□□ -0.19
Col9a1Q05722 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Asb11-201ENSMUST00000033755 1369 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Gm13689-201ENSMUST00000119360 685 ntBASIC13.89□□□□□ -0.19
Col9a1Q05722 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Col9a1Q05722 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC13.89□□□□□ -0.19
Col9a1Q05722 Gm5869-201ENSMUST00000200248 1257 ntBASIC13.89□□□□□ -0.19
Col9a1Q05722 Gm44126-201ENSMUST00000204831 514 ntBASIC13.89□□□□□ -0.19
Col9a1Q05722 Gm44551-201ENSMUST00000208804 171 ntBASIC13.89□□□□□ -0.19
Col9a1Q05722 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC13.89□□□□□ -0.19
Col9a1Q05722 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Gm10752-201ENSMUST00000218348 729 ntBASIC13.89□□□□□ -0.19
Col9a1Q05722 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC13.89□□□□□ -0.19
Col9a1Q05722 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col9a1Q05722 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
Col9a1Q05722 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Col9a1Q05722 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Hormad1-203ENSMUST00000107154 1444 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Gm29151-201ENSMUST00000196669 2513 ntTSL 5 BASIC13.89□□□□□ -0.19
Col9a1Q05722 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col9a1Q05722 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col9a1Q05722 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col9a1Q05722 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC13.88□□□□□ -0.19
Col9a1Q05722 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col9a1Q05722 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms