Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Cdx2P43241 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 Zscan30-202ENSMUST00000224144 1458 ntBASIC13.46□□□□□ -0.25
Cdx2P43241 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC13.46□□□□□ -0.26
Cdx2P43241 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Cdx2P43241 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Cdx2P43241 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
Cdx2P43241 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Cdx2P43241 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Cdx2P43241 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Cdx2P43241 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Cdx2P43241 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC13.45□□□□□ -0.26
Cdx2P43241 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC13.45□□□□□ -0.26
Cdx2P43241 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
Cdx2P43241 Gm27847-201ENSMUST00000183711 107 ntBASIC13.45□□□□□ -0.26
Cdx2P43241 Gm27375-201ENSMUST00000183799 107 ntBASIC13.45□□□□□ -0.26
Cdx2P43241 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC13.45□□□□□ -0.26
Cdx2P43241 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC13.45□□□□□ -0.26
Cdx2P43241 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Cdx2P43241 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC13.45□□□□□ -0.26
Cdx2P43241 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
Cdx2P43241 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC13.45□□□□□ -0.26
Cdx2P43241 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Cdx2P43241 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdx2P43241 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Cdx2P43241 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Cdx2P43241 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC13.44□□□□□ -0.26
Cdx2P43241 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
Cdx2P43241 Gm16011-201ENSMUST00000121567 2662 ntBASIC13.44□□□□□ -0.26
Cdx2P43241 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Gm14660-201ENSMUST00000119809 575 ntBASIC13.44□□□□□ -0.26
Cdx2P43241 Gm12416-201ENSMUST00000120911 1008 ntBASIC13.44□□□□□ -0.26
Cdx2P43241 Gm13385-201ENSMUST00000121089 220 ntBASIC13.44□□□□□ -0.26
Cdx2P43241 Gm15376-201ENSMUST00000122258 783 ntBASIC13.44□□□□□ -0.26
Cdx2P43241 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC13.44□□□□□ -0.26
Cdx2P43241 Snora78-201ENSMUST00000158630 128 ntBASIC13.44□□□□□ -0.26
Cdx2P43241 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC13.44□□□□□ -0.26
Cdx2P43241 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Gm37424-201ENSMUST00000191727 561 ntBASIC13.44□□□□□ -0.26
Cdx2P43241 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC13.44□□□□□ -0.26
Cdx2P43241 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
Cdx2P43241 Gm10478-201ENSMUST00000084451 396 ntBASIC13.44□□□□□ -0.26
Cdx2P43241 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Cdx2P43241 Gm6091-201ENSMUST00000098307 165 ntBASIC13.44□□□□□ -0.26
Cdx2P43241 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC13.44□□□□□ -0.26
Cdx2P43241 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdx2P43241 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Cdx2P43241 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
Cdx2P43241 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdx2P43241 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms