Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Hoxd3P09027 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC11.11□□□□□ -0.63
Hoxd3P09027 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Gm14201-201ENSMUST00000117627 289 ntBASIC11.11□□□□□ -0.63
Hoxd3P09027 Gm12428-201ENSMUST00000119844 727 ntBASIC11.11□□□□□ -0.63
Hoxd3P09027 Mir1897-201ENSMUST00000122581 272 ntBASIC11.11□□□□□ -0.63
Hoxd3P09027 Tbata-209ENSMUST00000148181 1017 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Hoxd3P09027 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC11.11□□□□□ -0.63
Hoxd3P09027 AC154517.1-201ENSMUST00000222785 629 ntTSL 3 BASIC11.11□□□□□ -0.63
Hoxd3P09027 Gm9063-201ENSMUST00000223299 582 ntBASIC11.11□□□□□ -0.63
Hoxd3P09027 Dupd1-202ENSMUST00000224735 548 ntBASIC11.11□□□□□ -0.63
Hoxd3P09027 Shd-206ENSMUST00000225145 998 ntBASIC11.11□□□□□ -0.63
Hoxd3P09027 AC149588.3-201ENSMUST00000227515 150 ntBASIC11.11□□□□□ -0.63
Hoxd3P09027 Olfr1437-201ENSMUST00000052558 1177 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Hoxd3P09027 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC11.11□□□□□ -0.63
Hoxd3P09027 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Hoxd3P09027 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Hoxd3P09027 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC11.11□□□□□ -0.63
Hoxd3P09027 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hoxd3P09027 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Hoxd3P09027 Gm42651-201ENSMUST00000199851 1339 ntBASIC11.1□□□□□ -0.63
Hoxd3P09027 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Hoxd3P09027 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Gm9252-201ENSMUST00000172364 1602 ntBASIC11.1□□□□□ -0.63
Hoxd3P09027 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Gm15653-201ENSMUST00000119247 907 ntBASIC11.1□□□□□ -0.63
Hoxd3P09027 Nr6a1os-201ENSMUST00000129089 645 ntTSL 2 BASIC11.1□□□□□ -0.63
Hoxd3P09027 Atp6v1c2-207ENSMUST00000156727 1279 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Gm22993-201ENSMUST00000175423 254 ntBASIC11.1□□□□□ -0.63
Hoxd3P09027 4930412E21Rik-201ENSMUST00000194267 778 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC11.1□□□□□ -0.63
Hoxd3P09027 Gm16476-201ENSMUST00000221544 139 ntBASIC11.1□□□□□ -0.63
Hoxd3P09027 Gm5626-201ENSMUST00000222151 1058 ntBASIC11.1□□□□□ -0.63
Hoxd3P09027 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC11.1□□□□□ -0.63
Hoxd3P09027 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Gm37728-201ENSMUST00000195025 2292 ntBASIC11.1□□□□□ -0.63
Hoxd3P09027 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hoxd3P09027 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Gm5320-201ENSMUST00000207163 1519 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
Hoxd3P09027 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Ksr1-207ENSMUST00000226282 5260 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Gm10605-202ENSMUST00000183019 3198 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms