Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC16.78■□□□□ 0.28
Col3a1P08121 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC16.78■□□□□ 0.28
Col3a1P08121 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC16.78■□□□□ 0.28
Col3a1P08121 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
Col3a1P08121 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Col3a1P08121 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
Col3a1P08121 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Gm4984-201ENSMUST00000115987 360 ntBASIC16.77■□□□□ 0.28
Col3a1P08121 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC16.77■□□□□ 0.28
Col3a1P08121 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Col3a1P08121 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col3a1P08121 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Col3a1P08121 Gm24447-201ENSMUST00000083977 338 ntBASIC16.77■□□□□ 0.28
Col3a1P08121 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col3a1P08121 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC16.77■□□□□ 0.27
Col3a1P08121 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col3a1P08121 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col3a1P08121 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC16.77■□□□□ 0.27
Col3a1P08121 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col3a1P08121 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Col3a1P08121 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC16.76■□□□□ 0.27
Col3a1P08121 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC16.76■□□□□ 0.27
Col3a1P08121 Gm27839-201ENSMUST00000184242 106 ntBASIC16.76■□□□□ 0.27
Col3a1P08121 Gm5276-201ENSMUST00000196683 1047 ntBASIC16.76■□□□□ 0.27
Col3a1P08121 Gm8598-201ENSMUST00000221184 836 ntBASIC16.76■□□□□ 0.27
Col3a1P08121 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Col3a1P08121 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.76■□□□□ 0.27
Col3a1P08121 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Col3a1P08121 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Col3a1P08121 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col3a1P08121 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Col3a1P08121 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Col3a1P08121 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC16.75■□□□□ 0.27
Col3a1P08121 Gm13612-201ENSMUST00000119276 390 ntBASIC16.75■□□□□ 0.27
Col3a1P08121 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Col3a1P08121 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC16.75■□□□□ 0.27
Col3a1P08121 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC16.75■□□□□ 0.27
Col3a1P08121 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC16.75■□□□□ 0.27
Col3a1P08121 Gm44397-201ENSMUST00000195950 113 ntBASIC16.75■□□□□ 0.27
Col3a1P08121 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC16.75■□□□□ 0.27
Col3a1P08121 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Gm5161-201ENSMUST00000075243 853 ntBASIC16.75■□□□□ 0.27
Col3a1P08121 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Col3a1P08121 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
Col3a1P08121 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
Col3a1P08121 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC16.75■□□□□ 0.27
Col3a1P08121 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col3a1P08121 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col3a1P08121 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms