Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Col5a1O88207 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Col5a1O88207 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Col5a1O88207 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Col5a1O88207 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC12.65□□□□□ -0.39
Col5a1O88207 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.65□□□□□ -0.39
Col5a1O88207 Gm37259-201ENSMUST00000193903 849 ntBASIC12.65□□□□□ -0.39
Col5a1O88207 Gm38341-201ENSMUST00000195357 515 ntBASIC12.65□□□□□ -0.39
Col5a1O88207 Gm10012-201ENSMUST00000078252 192 ntBASIC12.65□□□□□ -0.39
Col5a1O88207 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC12.64□□□□□ -0.39
Col5a1O88207 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Gm37812-201ENSMUST00000195216 2475 ntBASIC12.64□□□□□ -0.39
Col5a1O88207 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC12.64□□□□□ -0.39
Col5a1O88207 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Col5a1O88207 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC12.64□□□□□ -0.39
Col5a1O88207 Mir5132-201ENSMUST00000175166 71 ntBASIC12.64□□□□□ -0.39
Col5a1O88207 Gm45880-201ENSMUST00000213041 853 ntBASIC12.64□□□□□ -0.39
Col5a1O88207 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Col5a1O88207 Gm45133-201ENSMUST00000207548 2773 ntBASIC12.64□□□□□ -0.39
Col5a1O88207 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC12.64□□□□□ -0.39
Col5a1O88207 Gm42471-201ENSMUST00000201457 1865 ntBASIC12.64□□□□□ -0.39
Col5a1O88207 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC12.64□□□□□ -0.39
Col5a1O88207 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col5a1O88207 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Gm15782-201ENSMUST00000121073 445 ntBASIC12.63□□□□□ -0.39
Col5a1O88207 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC12.63□□□□□ -0.39
Col5a1O88207 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC12.63□□□□□ -0.39
Col5a1O88207 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Col5a1O88207 Gm8584-201ENSMUST00000171982 758 ntBASIC12.63□□□□□ -0.39
Col5a1O88207 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 AC093022.1-201ENSMUST00000226949 1072 ntBASIC12.63□□□□□ -0.39
Col5a1O88207 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Col5a1O88207 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC12.63□□□□□ -0.39
Col5a1O88207 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Gm13859-201ENSMUST00000119936 1423 ntBASIC12.63□□□□□ -0.39
Col5a1O88207 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Col5a1O88207 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Col5a1O88207 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col5a1O88207 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col5a1O88207 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col5a1O88207 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Col5a1O88207 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC12.62□□□□□ -0.39
Col5a1O88207 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Col5a1O88207 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.62□□□□□ -0.39
Col5a1O88207 Gm43094-201ENSMUST00000196549 921 ntBASIC12.62□□□□□ -0.39
Col5a1O88207 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC12.62□□□□□ -0.39
Col5a1O88207 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col5a1O88207 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col5a1O88207 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col5a1O88207 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col5a1O88207 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Col5a1O88207 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms