Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Gm13464-201ENSMUST00000119418 935 ntBASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 AC164565.1-201ENSMUST00000217520 1484 ntBASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC13.42□□□□□ -0.26
Trim3Q9R1R2 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Gm15483-201ENSMUST00000120338 456 ntBASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Gm9726-201ENSMUST00000180321 678 ntBASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Gm43474-201ENSMUST00000196415 774 ntBASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Gm43125-201ENSMUST00000201724 730 ntBASIC13.41□□□□□ -0.26
Trim3Q9R1R2 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 AC166341.4-201ENSMUST00000220625 123 ntBASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 AC131187.1-201ENSMUST00000224567 809 ntBASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim3Q9R1R2 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Gm11543-201ENSMUST00000120758 370 ntBASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Gm18737-201ENSMUST00000173594 937 ntBASIC13.4□□□□□ -0.26
Trim3Q9R1R2 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Gm5312-201ENSMUST00000203728 547 ntBASIC13.4□□□□□ -0.26
Trim3Q9R1R2 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms