Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Gm43438-201ENSMUST00000198133 379 ntBASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Gm45668-201ENSMUST00000211271 493 ntBASIC15.41■□□□□ 0.06
Trim54Q9ERP3 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 AC132467.2-202ENSMUST00000227726 559 ntBASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Trim54Q9ERP3 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Gm14127-201ENSMUST00000117906 678 ntBASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Gm45059-201ENSMUST00000205558 1077 ntBASIC15.4■□□□□ 0.06
Trim54Q9ERP3 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Gm15823-201ENSMUST00000064305 670 ntBASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trim54Q9ERP3 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC15.39■□□□□ 0.06
Trim54Q9ERP3 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim54Q9ERP3 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC15.38■□□□□ 0.05
Trim54Q9ERP3 Gm45384-201ENSMUST00000210451 277 ntBASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 63.7 ms