Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Gm9385-201ENSMUST00000117563 472 ntBASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Mir1895-201ENSMUST00000122615 79 ntBASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Gm37171-201ENSMUST00000192636 1185 ntBASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Gm37230-201ENSMUST00000194491 818 ntBASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Gm9182-201ENSMUST00000217829 639 ntBASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Gm44291-201ENSMUST00000203102 2865 ntBASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp39Q3TIX9 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 AC159649.2-201ENSMUST00000222984 3223 ntBASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Gm43399-201ENSMUST00000202546 2374 ntBASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 AC159114.1-201ENSMUST00000220349 266 ntBASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp39Q3TIX9 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Gm17968-201ENSMUST00000194902 784 ntBASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Gm44492-201ENSMUST00000197012 141 ntBASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 AC124549.3-201ENSMUST00000225541 367 ntBASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Gm8396-201ENSMUST00000057361 823 ntBASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp39Q3TIX9 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms