Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AC154412.1-201ENSMUST00000226540 2786 ntBASIC21.57■■□□□ 1.04
Cux1P53564 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cux1P53564 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cux1P53564 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC21.56■■□□□ 1.04
Cux1P53564 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC21.56■■□□□ 1.04
Cux1P53564 Gm19184-201ENSMUST00000196798 928 ntBASIC21.56■■□□□ 1.04
Cux1P53564 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC21.56■■□□□ 1.04
Cux1P53564 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Gm7172-201ENSMUST00000218047 1152 ntBASIC21.56■■□□□ 1.04
Cux1P53564 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Zkscan14-203ENSMUST00000198959 2243 ntBASIC21.56■■□□□ 1.04
Cux1P53564 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Cux1P53564 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC21.56■■□□□ 1.04
Cux1P53564 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cux1P53564 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
Cux1P53564 Gm14723-201ENSMUST00000118686 215 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Gm12537-201ENSMUST00000119266 1002 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Gm12070-201ENSMUST00000119551 1002 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Gm12671-201ENSMUST00000119978 1002 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Gm13292-201ENSMUST00000120014 1000 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Gm12403-201ENSMUST00000121384 959 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cux1P53564 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC21.55■■□□□ 1.04
Cux1P53564 Gm10359-201ENSMUST00000180167 1002 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Gm12033-201ENSMUST00000180654 1002 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Gm5559-201ENSMUST00000180755 1002 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Gm4335-201ENSMUST00000182581 1004 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cux1P53564 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cux1P53564 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC21.55■■□□□ 1.04
Cux1P53564 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cux1P53564 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Cux1P53564 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC21.55■■□□□ 1.04
Cux1P53564 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cux1P53564 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Cux1P53564 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cux1P53564 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cux1P53564 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cux1P53564 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC21.55■■□□□ 1.04
Cux1P53564 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Cux1P53564 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Cux1P53564 Gm7029-201ENSMUST00000173226 450 ntBASIC21.55■■□□□ 1.04
Cux1P53564 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Cux1P53564 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC21.54■■□□□ 1.04
Cux1P53564 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Cux1P53564 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC21.54■■□□□ 1.04
Cux1P53564 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Cux1P53564 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC21.54■■□□□ 1.04
Cux1P53564 Gm9124-201ENSMUST00000191789 1092 ntBASIC21.54■■□□□ 1.04
Cux1P53564 Gm9113-201ENSMUST00000192510 1018 ntBASIC21.54■■□□□ 1.04
Cux1P53564 Gm9131-201ENSMUST00000193557 1089 ntBASIC21.54■■□□□ 1.04
Cux1P53564 Gm9121-201ENSMUST00000193749 1071 ntBASIC21.54■■□□□ 1.04
Cux1P53564 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC21.54■■□□□ 1.04
Cux1P53564 Gm18934-201ENSMUST00000216671 1044 ntBASIC21.54■■□□□ 1.04
Cux1P53564 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cux1P53564 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cux1P53564 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cux1P53564 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Cux1P53564 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC21.53■■□□□ 1.04
Cux1P53564 Gm9856-201ENSMUST00000217077 2578 ntBASIC21.53■■□□□ 1.04
Cux1P53564 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cux1P53564 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
Cux1P53564 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cux1P53564 Gm10339-203ENSMUST00000225409 1671 ntBASIC21.53■■□□□ 1.04
Cux1P53564 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cux1P53564 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC21.53■■□□□ 1.04
Cux1P53564 Gm12384-201ENSMUST00000119228 919 ntBASIC21.53■■□□□ 1.04
Cux1P53564 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Cux1P53564 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC21.53■■□□□ 1.04
Cux1P53564 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC21.53■■□□□ 1.04
Cux1P53564 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC21.53■■□□□ 1.04
Cux1P53564 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cux1P53564 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cux1P53564 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cux1P53564 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Cux1P53564 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms