Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Gm12928-201ENSMUST00000117115 573 ntBASIC13.48□□□□□ -0.25
Cdx2P43241 Mup-ps23-201ENSMUST00000118063 630 ntBASIC13.48□□□□□ -0.25
Cdx2P43241 Gm11524-201ENSMUST00000119349 807 ntBASIC13.48□□□□□ -0.25
Cdx2P43241 Trav4d-2-201ENSMUST00000120914 335 ntBASIC13.48□□□□□ -0.25
Cdx2P43241 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC13.48□□□□□ -0.25
Cdx2P43241 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC13.48□□□□□ -0.25
Cdx2P43241 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Gm45331-201ENSMUST00000209868 554 ntBASIC13.48□□□□□ -0.25
Cdx2P43241 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC13.48□□□□□ -0.25
Cdx2P43241 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Cdx2P43241 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
Cdx2P43241 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Cdx2P43241 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Cdx2P43241 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Cdx2P43241 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Cdx2P43241 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC13.47□□□□□ -0.25
Cdx2P43241 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Cdx2P43241 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
Cdx2P43241 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Gm11814-201ENSMUST00000119515 929 ntBASIC13.47□□□□□ -0.25
Cdx2P43241 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC13.47□□□□□ -0.25
Cdx2P43241 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Gm8652-201ENSMUST00000181363 964 ntBASIC13.47□□□□□ -0.25
Cdx2P43241 Gm45784-201ENSMUST00000188360 142 ntBASIC13.47□□□□□ -0.25
Cdx2P43241 Gm7287-201ENSMUST00000205267 602 ntBASIC13.47□□□□□ -0.25
Cdx2P43241 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC13.47□□□□□ -0.25
Cdx2P43241 AC139350.3-201ENSMUST00000226151 420 ntBASIC13.47□□□□□ -0.25
Cdx2P43241 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC13.47□□□□□ -0.25
Cdx2P43241 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Rassf8-202ENSMUST00000058538 1131 ntBASIC13.47□□□□□ -0.25
Cdx2P43241 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Cdx2P43241 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Cdx2P43241 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
Cdx2P43241 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC13.47□□□□□ -0.25
Cdx2P43241 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC13.47□□□□□ -0.25
Cdx2P43241 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cdx2P43241 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm8775-201ENSMUST00000170943 1327 ntBASIC13.46□□□□□ -0.25
Cdx2P43241 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm13392-201ENSMUST00000117708 150 ntBASIC13.46□□□□□ -0.25
Cdx2P43241 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm8062-201ENSMUST00000139696 444 ntBASIC13.46□□□□□ -0.25
Cdx2P43241 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Cdx2P43241 Gm7561-201ENSMUST00000211203 886 ntBASIC13.46□□□□□ -0.25
Cdx2P43241 AC140451.2-201ENSMUST00000228030 664 ntBASIC13.46□□□□□ -0.25
Cdx2P43241 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms