Protein–RNA interactions for Protein: P40645

Sox6, Transcription factor SOX-6, mousemouse

Predictions only

Length 827 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox6P40645 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC13.4□□□□□ -0.26
Sox6P40645 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
Sox6P40645 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC13.4□□□□□ -0.26
Sox6P40645 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
Sox6P40645 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Sox6P40645 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Sox6P40645 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.27
Sox6P40645 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.27
Sox6P40645 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
Sox6P40645 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC13.39□□□□□ -0.27
Sox6P40645 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
Sox6P40645 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC13.39□□□□□ -0.27
Sox6P40645 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC13.39□□□□□ -0.27
Sox6P40645 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC13.39□□□□□ -0.27
Sox6P40645 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Gm17271-201ENSMUST00000165535 355 ntBASIC13.39□□□□□ -0.27
Sox6P40645 Gm5264-201ENSMUST00000190584 848 ntBASIC13.39□□□□□ -0.27
Sox6P40645 Gm2272-201ENSMUST00000194903 582 ntBASIC13.39□□□□□ -0.27
Sox6P40645 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC13.39□□□□□ -0.27
Sox6P40645 Thap2-203ENSMUST00000218989 527 ntBASIC13.39□□□□□ -0.27
Sox6P40645 AC154572.2-201ENSMUST00000225105 997 ntBASIC13.39□□□□□ -0.27
Sox6P40645 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Sox6P40645 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.39□□□□□ -0.27
Sox6P40645 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Sox6P40645 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Sox6P40645 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC13.38□□□□□ -0.27
Sox6P40645 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Sox6P40645 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC13.38□□□□□ -0.27
Sox6P40645 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Gm5177-201ENSMUST00000183092 997 ntBASIC13.38□□□□□ -0.27
Sox6P40645 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC13.38□□□□□ -0.27
Sox6P40645 Gm5712-201ENSMUST00000199748 1043 ntBASIC13.38□□□□□ -0.27
Sox6P40645 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC13.38□□□□□ -0.27
Sox6P40645 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC13.38□□□□□ -0.27
Sox6P40645 Mxra8os-201ENSMUST00000097740 687 ntBASIC13.38□□□□□ -0.27
Sox6P40645 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC13.38□□□□□ -0.27
Sox6P40645 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Sox6P40645 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC13.38□□□□□ -0.27
Sox6P40645 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox6P40645 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC13.38□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms