Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Msx1P13297 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Msx1P13297 Gm14928-201ENSMUST00000120198 477 ntBASIC13.55□□□□□ -0.24
Msx1P13297 Gm15063-201ENSMUST00000152648 895 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC13.55□□□□□ -0.24
Msx1P13297 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Gm6473-201ENSMUST00000188572 1210 ntBASIC13.55□□□□□ -0.24
Msx1P13297 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC13.55□□□□□ -0.24
Msx1P13297 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Gnat3-201ENSMUST00000030561 1361 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
Msx1P13297 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Msx1P13297 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Msx1P13297 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC13.54□□□□□ -0.24
Msx1P13297 Tcf21-202ENSMUST00000218002 1788 ntBASIC13.54□□□□□ -0.24
Msx1P13297 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC13.54□□□□□ -0.24
Msx1P13297 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC13.54□□□□□ -0.24
Msx1P13297 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Gm24694-201ENSMUST00000180054 110 ntBASIC13.54□□□□□ -0.24
Msx1P13297 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC13.54□□□□□ -0.24
Msx1P13297 Gm27663-201ENSMUST00000184839 110 ntBASIC13.54□□□□□ -0.24
Msx1P13297 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Msx1P13297 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Msx1P13297 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Msx1P13297 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Msx1P13297 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msx1P13297 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Msx1P13297 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC13.53□□□□□ -0.24
Msx1P13297 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC13.53□□□□□ -0.24
Msx1P13297 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.53□□□□□ -0.24
Msx1P13297 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Msx1P13297 Gm12859-201ENSMUST00000117834 427 ntBASIC13.53□□□□□ -0.24
Msx1P13297 Gm15321-201ENSMUST00000121290 288 ntBASIC13.53□□□□□ -0.24
Msx1P13297 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC13.53□□□□□ -0.24
Msx1P13297 Ighv5-13-201ENSMUST00000193550 290 ntBASIC13.53□□□□□ -0.24
Msx1P13297 Gm37436-201ENSMUST00000193842 1085 ntBASIC13.53□□□□□ -0.24
Msx1P13297 Gm44953-201ENSMUST00000208745 1286 ntBASIC13.53□□□□□ -0.24
Msx1P13297 AC124742.1-201ENSMUST00000219909 547 ntTSL 3 BASIC13.53□□□□□ -0.24
Msx1P13297 AC132446.1-201ENSMUST00000222655 226 ntBASIC13.53□□□□□ -0.24
Msx1P13297 AC154239.3-201ENSMUST00000226933 674 ntBASIC13.53□□□□□ -0.24
Msx1P13297 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Msx1P13297 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC13.53□□□□□ -0.24
Msx1P13297 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
Msx1P13297 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msx1P13297 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
Msx1P13297 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC13.53□□□□□ -0.24
Msx1P13297 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms