Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 AC140397.2-201ENSMUST00000224213 834 ntBASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Olfr286-202ENSMUST00000205305 969 ntBASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chmp6P0C0A3 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Gm9824-201ENSMUST00000178707 561 ntBASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chmp6P0C0A3 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Gm9856-201ENSMUST00000217077 2578 ntBASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chmp6P0C0A3 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 AC162938.1-201ENSMUST00000213140 2323 ntBASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Fgf17-202ENSMUST00000227123 1336 ntBASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Gm25287-201ENSMUST00000103846 110 ntBASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Gm22918-201ENSMUST00000103855 110 ntBASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Mir449b-201ENSMUST00000104833 80 ntBASIC15.51■□□□□ 0.07
Chmp6P0C0A3 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 59.3 ms