Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC16.81■□□□□ 0.28
Col3a1P08121 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Col3a1P08121 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC16.81■□□□□ 0.28
Col3a1P08121 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Col3a1P08121 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col3a1P08121 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Col3a1P08121 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC16.8■□□□□ 0.28
Col3a1P08121 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC16.8■□□□□ 0.28
Col3a1P08121 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Col3a1P08121 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Gm17794-201ENSMUST00000220252 955 ntBASIC16.8■□□□□ 0.28
Col3a1P08121 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Col3a1P08121 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.8■□□□□ 0.28
Col3a1P08121 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC16.8■□□□□ 0.28
Col3a1P08121 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Gm38102-201ENSMUST00000192791 1935 ntBASIC16.8■□□□□ 0.28
Col3a1P08121 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC16.8■□□□□ 0.28
Col3a1P08121 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC16.8■□□□□ 0.28
Col3a1P08121 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC16.8■□□□□ 0.28
Col3a1P08121 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Gm24196-201ENSMUST00000179161 110 ntBASIC16.8■□□□□ 0.28
Col3a1P08121 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC16.8■□□□□ 0.28
Col3a1P08121 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col3a1P08121 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC16.8■□□□□ 0.28
Col3a1P08121 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Col3a1P08121 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.79■□□□□ 0.28
Col3a1P08121 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
Col3a1P08121 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC16.79■□□□□ 0.28
Col3a1P08121 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Mir692-1-201ENSMUST00000102263 109 ntBASIC16.79■□□□□ 0.28
Col3a1P08121 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Col3a1P08121 Gm16342-201ENSMUST00000124025 1025 ntBASIC16.79■□□□□ 0.28
Col3a1P08121 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC16.79■□□□□ 0.28
Col3a1P08121 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC16.79■□□□□ 0.28
Col3a1P08121 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC16.79■□□□□ 0.28
Col3a1P08121 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col3a1P08121 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
Col3a1P08121 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Col3a1P08121 AL645783.1-201ENSMUST00000221416 1832 ntBASIC16.78■□□□□ 0.28
Col3a1P08121 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Col3a1P08121 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col3a1P08121 Nupl1-207ENSMUST00000225311 2475 ntBASIC16.78■□□□□ 0.28
Col3a1P08121 Gm12928-201ENSMUST00000117115 573 ntBASIC16.78■□□□□ 0.28
Col3a1P08121 Gm12390-201ENSMUST00000117897 397 ntBASIC16.78■□□□□ 0.28
Col3a1P08121 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms