Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lmx1bO88609 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC12.94□□□□□ -0.34
Lmx1bO88609 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lmx1bO88609 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lmx1bO88609 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lmx1bO88609 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lmx1bO88609 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lmx1bO88609 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lmx1bO88609 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lmx1bO88609 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lmx1bO88609 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lmx1bO88609 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC12.93□□□□□ -0.34
Lmx1bO88609 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
Lmx1bO88609 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Gm27631-201ENSMUST00000184163 466 ntBASIC12.93□□□□□ -0.34
Lmx1bO88609 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Lmx1bO88609 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC12.93□□□□□ -0.34
Lmx1bO88609 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Lmx1bO88609 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
Lmx1bO88609 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC12.93□□□□□ -0.34
Lmx1bO88609 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Lmx1bO88609 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lmx1bO88609 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Lmx1bO88609 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Lmx1bO88609 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Lmx1bO88609 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC12.92□□□□□ -0.34
Lmx1bO88609 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC12.92□□□□□ -0.34
Lmx1bO88609 Gm9182-201ENSMUST00000217829 639 ntBASIC12.92□□□□□ -0.34
Lmx1bO88609 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Lmx1bO88609 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC12.92□□□□□ -0.34
Lmx1bO88609 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC12.92□□□□□ -0.34
Lmx1bO88609 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lmx1bO88609 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Lmx1bO88609 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC12.91□□□□□ -0.34
Lmx1bO88609 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC12.91□□□□□ -0.34
Lmx1bO88609 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC12.91□□□□□ -0.34
Lmx1bO88609 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC12.91□□□□□ -0.34
Lmx1bO88609 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.91□□□□□ -0.34
Lmx1bO88609 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC12.91□□□□□ -0.34
Lmx1bO88609 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC12.91□□□□□ -0.34
Lmx1bO88609 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC12.91□□□□□ -0.34
Lmx1bO88609 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Lmx1bO88609 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC12.91□□□□□ -0.34
Lmx1bO88609 Cd63-ps-201ENSMUST00000145417 875 ntBASIC12.91□□□□□ -0.34
Lmx1bO88609 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC12.91□□□□□ -0.34
Lmx1bO88609 Gm16215-201ENSMUST00000161990 637 ntBASIC12.91□□□□□ -0.34
Lmx1bO88609 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC12.91□□□□□ -0.34
Lmx1bO88609 Gm46209-201ENSMUST00000217912 553 ntBASIC12.91□□□□□ -0.34
Lmx1bO88609 Dupd1-202ENSMUST00000224735 548 ntBASIC12.91□□□□□ -0.34
Lmx1bO88609 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lmx1bO88609 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 82.9 ms