Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Gm16061-201ENSMUST00000122167 857 ntBASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Gm13474-201ENSMUST00000122466 815 ntBASIC14.64□□□□□ -0.07
Trim55G3X8Y1 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Gm33142-201ENSMUST00000193913 867 ntBASIC14.64□□□□□ -0.07
Trim55G3X8Y1 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 AC122351.1-201ENSMUST00000220467 126 ntBASIC14.64□□□□□ -0.07
Trim55G3X8Y1 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Gm14371-201ENSMUST00000138925 1518 ntBASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Trim55G3X8Y1 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Gm42706-201ENSMUST00000199733 1910 ntBASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Il17rd-203ENSMUST00000225146 3366 ntBASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim55G3X8Y1 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim55G3X8Y1 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim55G3X8Y1 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim55G3X8Y1 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim55G3X8Y1 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim55G3X8Y1 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim55G3X8Y1 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim55G3X8Y1 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim55G3X8Y1 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim55G3X8Y1 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
Trim55G3X8Y1 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms