Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.23■□□□□ 0.83
Pif1Q80SX8 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pif1Q80SX8 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pif1Q80SX8 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.22■□□□□ 0.83
Pif1Q80SX8 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pif1Q80SX8 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Pif1Q80SX8 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pif1Q80SX8 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pif1Q80SX8 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC20.21■□□□□ 0.83
Pif1Q80SX8 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pif1Q80SX8 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pif1Q80SX8 Gm10232-201ENSMUST00000089221 720 ntBASIC20.21■□□□□ 0.83
Pif1Q80SX8 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pif1Q80SX8 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.21■□□□□ 0.83
Pif1Q80SX8 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pif1Q80SX8 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Pif1Q80SX8 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pif1Q80SX8 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Pif1Q80SX8 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Pif1Q80SX8 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
Pif1Q80SX8 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC20.2■□□□□ 0.82
Pif1Q80SX8 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pif1Q80SX8 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.2■□□□□ 0.82
Pif1Q80SX8 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pif1Q80SX8 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pif1Q80SX8 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Pif1Q80SX8 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pif1Q80SX8 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pif1Q80SX8 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.18■□□□□ 0.82
Pif1Q80SX8 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pif1Q80SX8 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pif1Q80SX8 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Pif1Q80SX8 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
Pif1Q80SX8 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pif1Q80SX8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pif1Q80SX8 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.17■□□□□ 0.82
Pif1Q80SX8 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pif1Q80SX8 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pif1Q80SX8 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pif1Q80SX8 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Pif1Q80SX8 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pif1Q80SX8 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Pif1Q80SX8 Etf1-202ENSMUST00000180351 108 ntBASIC20.16■□□□□ 0.82
Pif1Q80SX8 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.16■□□□□ 0.82
Pif1Q80SX8 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pif1Q80SX8 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pif1Q80SX8 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pif1Q80SX8 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pif1Q80SX8 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pif1Q80SX8 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pif1Q80SX8 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pif1Q80SX8 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Pif1Q80SX8 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Pif1Q80SX8 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Pif1Q80SX8 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Pif1Q80SX8 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
Pif1Q80SX8 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Pif1Q80SX8 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Pif1Q80SX8 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
Pif1Q80SX8 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pif1Q80SX8 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Pif1Q80SX8 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pif1Q80SX8 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pif1Q80SX8 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pif1Q80SX8 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pif1Q80SX8 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pif1Q80SX8 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pif1Q80SX8 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Pif1Q80SX8 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.12■□□□□ 0.81
Pif1Q80SX8 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.11■□□□□ 0.81
Pif1Q80SX8 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pif1Q80SX8 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pif1Q80SX8 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pif1Q80SX8 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pif1Q80SX8 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pif1Q80SX8 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pif1Q80SX8 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Pif1Q80SX8 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pif1Q80SX8 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.1■□□□□ 0.81
Pif1Q80SX8 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Pif1Q80SX8 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Pif1Q80SX8 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pif1Q80SX8 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pif1Q80SX8 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.09■□□□□ 0.81
Pif1Q80SX8 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pif1Q80SX8 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pif1Q80SX8 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Pif1Q80SX8 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.08■□□□□ 0.81
Pif1Q80SX8 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Pif1Q80SX8 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
Pif1Q80SX8 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pif1Q80SX8 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Pif1Q80SX8 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Pif1Q80SX8 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pif1Q80SX8 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pif1Q80SX8 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Pif1Q80SX8 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Pif1Q80SX8 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Pif1Q80SX8 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pif1Q80SX8 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms