Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav5d-4Q5R1F6 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav5d-4Q5R1F6 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trav5d-4Q5R1F6 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav5d-4Q5R1F6 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav5d-4Q5R1F6 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav5d-4Q5R1F6 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav5d-4Q5R1F6 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC18.81■□□□□ 0.6
Trav5d-4Q5R1F6 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav5d-4Q5R1F6 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav5d-4Q5R1F6 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Trav5d-4Q5R1F6 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav5d-4Q5R1F6 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Gm11687-201ENSMUST00000118911 886 ntBASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Gm28731-201ENSMUST00000185564 1569 ntBASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trav5d-4Q5R1F6 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trav5d-4Q5R1F6 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav5d-4Q5R1F6 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav5d-4Q5R1F6 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav5d-4Q5R1F6 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav5d-4Q5R1F6 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav5d-4Q5R1F6 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trav5d-4Q5R1F6 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav5d-4Q5R1F6 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav5d-4Q5R1F6 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav5d-4Q5R1F6 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Trav5d-4Q5R1F6 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav5d-4Q5R1F6 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav5d-4Q5R1F6 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
Trav5d-4Q5R1F6 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trav5d-4Q5R1F6 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav5d-4Q5R1F6 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Trav5d-4Q5R1F6 AC153524.1-201ENSMUST00000220436 1935 ntBASIC18.77■□□□□ 0.6
Trav5d-4Q5R1F6 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav5d-4Q5R1F6 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav5d-4Q5R1F6 Gm44428-201ENSMUST00000204474 874 ntBASIC18.77■□□□□ 0.6
Trav5d-4Q5R1F6 Gm5987-201ENSMUST00000196433 1151 ntBASIC18.76■□□□□ 0.59
Trav5d-4Q5R1F6 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Trav5d-4Q5R1F6 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav5d-4Q5R1F6 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav5d-4Q5R1F6 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Trav5d-4Q5R1F6 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC18.75■□□□□ 0.59
Trav5d-4Q5R1F6 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav5d-4Q5R1F6 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC18.75■□□□□ 0.59
Trav5d-4Q5R1F6 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav5d-4Q5R1F6 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav5d-4Q5R1F6 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Trav5d-4Q5R1F6 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Trav5d-4Q5R1F6 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav5d-4Q5R1F6 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav5d-4Q5R1F6 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav5d-4Q5R1F6 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC18.73■□□□□ 0.59
Trav5d-4Q5R1F6 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav5d-4Q5R1F6 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav5d-4Q5R1F6 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav5d-4Q5R1F6 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav5d-4Q5R1F6 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav5d-4Q5R1F6 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav5d-4Q5R1F6 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav5d-4Q5R1F6 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav5d-4Q5R1F6 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Trav5d-4Q5R1F6 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC18.71■□□□□ 0.59
Trav5d-4Q5R1F6 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav5d-4Q5R1F6 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav5d-4Q5R1F6 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav5d-4Q5R1F6 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Trav5d-4Q5R1F6 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC18.7■□□□□ 0.58
Trav5d-4Q5R1F6 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav5d-4Q5R1F6 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Trav5d-4Q5R1F6 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav5d-4Q5R1F6 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav5d-4Q5R1F6 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav5d-4Q5R1F6 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav5d-4Q5R1F6 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav5d-4Q5R1F6 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Trav5d-4Q5R1F6 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav5d-4Q5R1F6 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav5d-4Q5R1F6 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav5d-4Q5R1F6 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav5d-4Q5R1F6 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav5d-4Q5R1F6 AC151971.4-201ENSMUST00000214717 704 ntBASIC18.68■□□□□ 0.58
Trav5d-4Q5R1F6 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav5d-4Q5R1F6 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC18.68■□□□□ 0.58
Trav5d-4Q5R1F6 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms