Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lmx1bO88609 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Lmx1bO88609 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Lmx1bO88609 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Lmx1bO88609 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Lmx1bO88609 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Lmx1bO88609 Gm13238-201ENSMUST00000117655 780 ntBASIC19.81■□□□□ 0.76
Lmx1bO88609 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.81■□□□□ 0.76
Lmx1bO88609 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.81■□□□□ 0.76
Lmx1bO88609 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lmx1bO88609 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Lmx1bO88609 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lmx1bO88609 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lmx1bO88609 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lmx1bO88609 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lmx1bO88609 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lmx1bO88609 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lmx1bO88609 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Lmx1bO88609 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Lmx1bO88609 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lmx1bO88609 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lmx1bO88609 Gm7199-201ENSMUST00000118327 1485 ntBASIC19.79■□□□□ 0.76
Lmx1bO88609 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lmx1bO88609 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lmx1bO88609 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lmx1bO88609 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lmx1bO88609 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.77■□□□□ 0.76
Lmx1bO88609 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Lmx1bO88609 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lmx1bO88609 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lmx1bO88609 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lmx1bO88609 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Lmx1bO88609 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.76■□□□□ 0.75
Lmx1bO88609 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lmx1bO88609 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lmx1bO88609 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Lmx1bO88609 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Lmx1bO88609 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lmx1bO88609 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lmx1bO88609 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lmx1bO88609 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lmx1bO88609 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Lmx1bO88609 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lmx1bO88609 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lmx1bO88609 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lmx1bO88609 Gm15546-201ENSMUST00000122095 826 ntBASIC19.74■□□□□ 0.75
Lmx1bO88609 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lmx1bO88609 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.74■□□□□ 0.75
Lmx1bO88609 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lmx1bO88609 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lmx1bO88609 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lmx1bO88609 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lmx1bO88609 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lmx1bO88609 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lmx1bO88609 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lmx1bO88609 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Lmx1bO88609 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC19.73■□□□□ 0.75
Lmx1bO88609 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
Lmx1bO88609 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lmx1bO88609 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.72■□□□□ 0.75
Lmx1bO88609 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lmx1bO88609 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lmx1bO88609 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lmx1bO88609 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lmx1bO88609 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lmx1bO88609 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lmx1bO88609 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC19.72■□□□□ 0.75
Lmx1bO88609 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lmx1bO88609 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lmx1bO88609 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Lmx1bO88609 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.71■□□□□ 0.75
Lmx1bO88609 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lmx1bO88609 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lmx1bO88609 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lmx1bO88609 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1bO88609 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.7■□□□□ 0.74
Lmx1bO88609 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Lmx1bO88609 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1bO88609 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1bO88609 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.7■□□□□ 0.74
Lmx1bO88609 Gm45444-201ENSMUST00000211394 898 ntBASIC19.7■□□□□ 0.74
Lmx1bO88609 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1bO88609 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Lmx1bO88609 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1bO88609 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1bO88609 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1bO88609 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Lmx1bO88609 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1bO88609 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.69■□□□□ 0.74
Lmx1bO88609 Gm43566-201ENSMUST00000196851 808 ntBASIC19.69■□□□□ 0.74
Lmx1bO88609 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.69■□□□□ 0.74
Lmx1bO88609 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Lmx1bO88609 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1bO88609 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lmx1bO88609 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Lmx1bO88609 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lmx1bO88609 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Lmx1bO88609 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Lmx1bO88609 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Lmx1bO88609 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms