Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Gm12176-201ENSMUST00000121420 875 ntBASIC16.65■□□□□ 0.26
Scn11aQ9R053 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Scn11aQ9R053 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC16.64■□□□□ 0.26
Scn11aQ9R053 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Scn11aQ9R053 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 AC140451.2-201ENSMUST00000228030 664 ntBASIC16.64■□□□□ 0.25
Scn11aQ9R053 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.64■□□□□ 0.25
Scn11aQ9R053 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Gm13612-201ENSMUST00000119276 390 ntBASIC16.64■□□□□ 0.25
Scn11aQ9R053 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Gm27243-201ENSMUST00000183964 521 ntBASIC16.64■□□□□ 0.25
Scn11aQ9R053 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 AC122459.1-201ENSMUST00000228373 885 ntBASIC16.64■□□□□ 0.25
Scn11aQ9R053 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Scn11aQ9R053 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC16.63■□□□□ 0.25
Scn11aQ9R053 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Gm27572-201ENSMUST00000183702 255 ntBASIC16.63■□□□□ 0.25
Scn11aQ9R053 Gm27731-201ENSMUST00000185192 107 ntBASIC16.63■□□□□ 0.25
Scn11aQ9R053 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Scn11aQ9R053 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Scn11aQ9R053 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Gm12620-201ENSMUST00000119791 1986 ntBASIC16.62■□□□□ 0.25
Scn11aQ9R053 Gm12612-201ENSMUST00000140182 1986 ntBASIC16.62■□□□□ 0.25
Scn11aQ9R053 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Gm17870-201ENSMUST00000219489 1174 ntBASIC16.62■□□□□ 0.25
Scn11aQ9R053 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn11aQ9R053 Gm37297-201ENSMUST00000192974 2384 ntBASIC16.62■□□□□ 0.25
Scn11aQ9R053 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms