Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Gm8410-201ENSMUST00000117225 605 ntBASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Gm13616-201ENSMUST00000120600 222 ntBASIC17.24■□□□□ 0.35
Brf1Q8CFK2 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Gm37277-201ENSMUST00000194052 1111 ntBASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 BC001981-202ENSMUST00000191393 1545 ntBASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Brf1Q8CFK2 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Gm22175-201ENSMUST00000175007 78 ntBASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 AC090659.2-201ENSMUST00000225378 1186 ntBASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Gm45751-201ENSMUST00000210185 1573 ntBASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC17.23■□□□□ 0.35
Brf1Q8CFK2 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Gm37171-201ENSMUST00000192636 1185 ntBASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Gm38294-201ENSMUST00000192831 381 ntBASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 AC139382.1-201ENSMUST00000221402 498 ntBASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Brf1Q8CFK2 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms