Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
Hmgb1P63158 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb1P63158 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb1P63158 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb1P63158 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb1P63158 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb1P63158 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb1P63158 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Hmgb1P63158 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb1P63158 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Hmgb1P63158 Gm6159-201ENSMUST00000191249 1724 ntBASIC15.71■□□□□ 0.1
Hmgb1P63158 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Hmgb1P63158 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
Hmgb1P63158 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.7■□□□□ 0.1
Hmgb1P63158 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Gm38102-201ENSMUST00000192791 1935 ntBASIC15.7■□□□□ 0.1
Hmgb1P63158 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Hmgb1P63158 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb1P63158 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Gm5763-201ENSMUST00000155951 1530 ntBASIC15.69■□□□□ 0.1
Hmgb1P63158 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Gm17271-201ENSMUST00000165535 355 ntBASIC15.69■□□□□ 0.1
Hmgb1P63158 Gm8584-201ENSMUST00000171982 758 ntBASIC15.69■□□□□ 0.1
Hmgb1P63158 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC15.69■□□□□ 0.1
Hmgb1P63158 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb1P63158 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Hmgb1P63158 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Hmgb1P63158 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb1P63158 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
Hmgb1P63158 Gm12260-201ENSMUST00000122447 411 ntBASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms