Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 AC124751.1-201ENSMUST00000222716 1408 ntBASIC15.09■□□□□ 0.01
Shmt1P50431 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Shmt1P50431 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Shmt1P50431 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC15.09■□□□□ 0.01
Shmt1P50431 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Shmt1P50431 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC15.09■□□□□ 0.01
Shmt1P50431 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Shmt1P50431 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Shmt1P50431 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC15.09■□□□□ 0.01
Shmt1P50431 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC15.09■□□□□ 0.01
Shmt1P50431 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
Shmt1P50431 Ssr1-204ENSMUST00000225319 1610 ntBASIC15.09■□□□□ 0.01
Shmt1P50431 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC15.09■□□□□ 0.01
Shmt1P50431 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Shmt1P50431 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Shmt1P50431 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC15.08■□□□□ 0.01
Shmt1P50431 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Shmt1P50431 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC15.08■□□□□ 0.01
Shmt1P50431 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
Shmt1P50431 Gm37411-201ENSMUST00000194180 2282 ntBASIC15.08■□□□□ 0
Shmt1P50431 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC15.08■□□□□ 0
Shmt1P50431 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Gm4204-201ENSMUST00000110798 1231 ntBASIC15.08■□□□□ 0
Shmt1P50431 Gm4875-201ENSMUST00000118257 786 ntBASIC15.08■□□□□ 0
Shmt1P50431 Gm15957-201ENSMUST00000118893 974 ntBASIC15.08■□□□□ 0
Shmt1P50431 Gm12134-201ENSMUST00000122109 520 ntBASIC15.08■□□□□ 0
Shmt1P50431 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC15.08■□□□□ 0
Shmt1P50431 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Shmt1P50431 Wdyhv1-203ENSMUST00000226889 394 ntBASIC15.08■□□□□ 0
Shmt1P50431 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC15.08■□□□□ 0
Shmt1P50431 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC15.08■□□□□ 0
Shmt1P50431 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC15.08■□□□□ 0
Shmt1P50431 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC15.08■□□□□ 0
Shmt1P50431 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shmt1P50431 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.08■□□□□ 0
Shmt1P50431 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Shmt1P50431 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Shmt1P50431 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Gm6159-201ENSMUST00000191249 1724 ntBASIC15.07■□□□□ 0
Shmt1P50431 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Gm5866-201ENSMUST00000177881 973 ntBASIC15.07■□□□□ 0
Shmt1P50431 Mir7684-201ENSMUST00000183858 60 ntBASIC15.07■□□□□ 0
Shmt1P50431 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC15.07■□□□□ 0
Shmt1P50431 Gm5186-201ENSMUST00000218781 920 ntBASIC15.07■□□□□ 0
Shmt1P50431 Gm9229-201ENSMUST00000222777 126 ntBASIC15.07■□□□□ 0
Shmt1P50431 AC156016.3-201ENSMUST00000228623 344 ntBASIC15.07■□□□□ 0
Shmt1P50431 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC15.07■□□□□ 0
Shmt1P50431 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Shmt1P50431 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Shmt1P50431 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Shmt1P50431 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Mmp14-206ENSMUST00000225641 3238 ntBASIC15.07■□□□□ 0
Shmt1P50431 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Shmt1P50431 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Shmt1P50431 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Shmt1P50431 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Shmt1P50431 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms