Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC17.08■□□□□ 0.32
Rfx1P48377 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 Ksr1-207ENSMUST00000226282 5260 ntBASIC17.07■□□□□ 0.32
Rfx1P48377 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rfx1P48377 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rfx1P48377 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
Rfx1P48377 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
Rfx1P48377 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC17.07■□□□□ 0.32
Rfx1P48377 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Rfx1P48377 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC17.07■□□□□ 0.32
Rfx1P48377 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.07■□□□□ 0.32
Rfx1P48377 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC17.07■□□□□ 0.32
Rfx1P48377 Rps4l-201ENSMUST00000071745 943 ntBASIC17.07■□□□□ 0.32
Rfx1P48377 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rfx1P48377 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rfx1P48377 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rfx1P48377 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
Rfx1P48377 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rfx1P48377 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Rfx1P48377 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Rfx1P48377 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rfx1P48377 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rfx1P48377 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Rfx1P48377 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rfx1P48377 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC17.06■□□□□ 0.32
Rfx1P48377 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Rfx1P48377 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC17.06■□□□□ 0.32
Rfx1P48377 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Gm7862-201ENSMUST00000121461 292 ntBASIC17.06■□□□□ 0.32
Rfx1P48377 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.06■□□□□ 0.32
Rfx1P48377 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC17.06■□□□□ 0.32
Rfx1P48377 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.06■□□□□ 0.32
Rfx1P48377 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC17.06■□□□□ 0.32
Rfx1P48377 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Rfx1P48377 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Gm6159-201ENSMUST00000191249 1724 ntBASIC17.06■□□□□ 0.32
Rfx1P48377 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Gm12626-201ENSMUST00000117339 1983 ntBASIC17.06■□□□□ 0.32
Rfx1P48377 Gm12623-201ENSMUST00000119849 1983 ntBASIC17.06■□□□□ 0.32
Rfx1P48377 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rfx1P48377 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rfx1P48377 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rfx1P48377 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rfx1P48377 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rfx1P48377 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
Rfx1P48377 Gm24589-201ENSMUST00000116692 94 ntBASIC17.05■□□□□ 0.32
Rfx1P48377 Gm11452-201ENSMUST00000122376 690 ntBASIC17.05■□□□□ 0.32
Rfx1P48377 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rfx1P48377 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.05■□□□□ 0.32
Rfx1P48377 Gm27300-201ENSMUST00000184085 97 ntBASIC17.05■□□□□ 0.32
Rfx1P48377 Gm27335-201ENSMUST00000184758 97 ntBASIC17.05■□□□□ 0.32
Rfx1P48377 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rfx1P48377 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rfx1P48377 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rfx1P48377 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC17.05■□□□□ 0.32
Rfx1P48377 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Rfx1P48377 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rfx1P48377 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rfx1P48377 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Rfx1P48377 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Rfx1P48377 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Rfx1P48377 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
Rfx1P48377 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC17.04■□□□□ 0.32
Rfx1P48377 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC17.04■□□□□ 0.32
Rfx1P48377 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rfx1P48377 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Rfx1P48377 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms