Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Gm12134-201ENSMUST00000122109 520 ntBASIC13.58□□□□□ -0.24
Msx1P13297 AV099323-201ENSMUST00000124336 921 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Zfp738-202ENSMUST00000125495 712 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Gm13299-201ENSMUST00000133644 425 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Gm13307-202ENSMUST00000142990 425 ntTSL 5 BASIC13.58□□□□□ -0.24
Msx1P13297 Gm9726-201ENSMUST00000180321 678 ntBASIC13.58□□□□□ -0.24
Msx1P13297 Gm7775-201ENSMUST00000218871 853 ntBASIC13.58□□□□□ -0.24
Msx1P13297 AC130829.1-201ENSMUST00000221548 494 ntBASIC13.58□□□□□ -0.24
Msx1P13297 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Msx1P13297 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
Msx1P13297 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC13.58□□□□□ -0.24
Msx1P13297 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Msx1P13297 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
Msx1P13297 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Msx1P13297 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Msx1P13297 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Gm13233-201ENSMUST00000118760 1443 ntBASIC13.57□□□□□ -0.24
Msx1P13297 Gm13244-201ENSMUST00000118855 1446 ntBASIC13.57□□□□□ -0.24
Msx1P13297 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Gm43509-201ENSMUST00000196551 2594 ntBASIC13.57□□□□□ -0.24
Msx1P13297 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Msx1P13297 Gm6539-201ENSMUST00000119157 1064 ntBASIC13.57□□□□□ -0.24
Msx1P13297 4933405E24Rik-201ENSMUST00000131019 1078 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Gm6944-201ENSMUST00000182449 1006 ntBASIC13.57□□□□□ -0.24
Msx1P13297 Gm27920-201ENSMUST00000183953 96 ntBASIC13.57□□□□□ -0.24
Msx1P13297 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Msx1P13297 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
Msx1P13297 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Msx1P13297 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC13.57□□□□□ -0.24
Msx1P13297 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
Msx1P13297 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Msx1P13297 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Msx1P13297 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC13.57□□□□□ -0.24
Msx1P13297 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Msx1P13297 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Gm12620-201ENSMUST00000119791 1986 ntBASIC13.56□□□□□ -0.24
Msx1P13297 Gm12612-201ENSMUST00000140182 1986 ntBASIC13.56□□□□□ -0.24
Msx1P13297 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC13.56□□□□□ -0.24
Msx1P13297 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC13.56□□□□□ -0.24
Msx1P13297 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC13.56□□□□□ -0.24
Msx1P13297 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC13.56□□□□□ -0.24
Msx1P13297 Gm27533-201ENSMUST00000183800 152 ntBASIC13.56□□□□□ -0.24
Msx1P13297 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Gm29500-201ENSMUST00000185992 1344 ntTSL 5 BASIC13.56□□□□□ -0.24
Msx1P13297 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC13.56□□□□□ -0.24
Msx1P13297 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC13.56□□□□□ -0.24
Msx1P13297 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC13.56□□□□□ -0.24
Msx1P13297 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msx1P13297 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Msx1P13297 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msx1P13297 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Msx1P13297 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Msx1P13297 AC164565.1-201ENSMUST00000217520 1484 ntBASIC13.55□□□□□ -0.24
Msx1P13297 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 151.5 ms