Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col1a1P11087 Gm29705-201ENSMUST00000212598 474 ntBASIC16.51■□□□□ 0.23
Col1a1P11087 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col1a1P11087 Gm17383-201ENSMUST00000078739 1041 ntBASIC16.51■□□□□ 0.23
Col1a1P11087 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.51■□□□□ 0.23
Col1a1P11087 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col1a1P11087 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col1a1P11087 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Col1a1P11087 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col1a1P11087 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col1a1P11087 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Col1a1P11087 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
Col1a1P11087 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Col1a1P11087 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Gm38002-201ENSMUST00000193255 180 ntBASIC16.5■□□□□ 0.23
Col1a1P11087 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC16.5■□□□□ 0.23
Col1a1P11087 Gm3961-201ENSMUST00000204425 994 ntBASIC16.5■□□□□ 0.23
Col1a1P11087 CT485787.1-201ENSMUST00000225617 968 ntBASIC16.5■□□□□ 0.23
Col1a1P11087 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC16.5■□□□□ 0.23
Col1a1P11087 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Col1a1P11087 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Col1a1P11087 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col1a1P11087 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC16.49■□□□□ 0.23
Col1a1P11087 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
Col1a1P11087 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Mir8109-201ENSMUST00000184375 117 ntBASIC16.49■□□□□ 0.23
Col1a1P11087 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC16.49■□□□□ 0.23
Col1a1P11087 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC16.49■□□□□ 0.23
Col1a1P11087 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC16.49■□□□□ 0.23
Col1a1P11087 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Col1a1P11087 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Col1a1P11087 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Col1a1P11087 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Gm12846-201ENSMUST00000120431 1373 ntBASIC16.49■□□□□ 0.23
Col1a1P11087 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col1a1P11087 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Col1a1P11087 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Col1a1P11087 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Gm18827-201ENSMUST00000188341 790 ntBASIC16.48■□□□□ 0.23
Col1a1P11087 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC16.48■□□□□ 0.23
Col1a1P11087 Gm9823-201ENSMUST00000051212 327 ntBASIC16.48■□□□□ 0.23
Col1a1P11087 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC16.48■□□□□ 0.23
Col1a1P11087 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
Col1a1P11087 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Col1a1P11087 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Col1a1P11087 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC16.48■□□□□ 0.23
Col1a1P11087 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Gm4271-201ENSMUST00000174444 973 ntBASIC16.48■□□□□ 0.23
Col1a1P11087 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col1a1P11087 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms