Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim55G3X8Y1 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim55G3X8Y1 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim55G3X8Y1 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Trim55G3X8Y1 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim55G3X8Y1 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim55G3X8Y1 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim55G3X8Y1 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 AC121801.1-201ENSMUST00000225363 1899 ntBASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Gm6345-202ENSMUST00000180900 204 ntBASIC14.67□□□□□ -0.06
Trim55G3X8Y1 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Gm18101-201ENSMUST00000215769 548 ntBASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim55G3X8Y1 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Gm22697-201ENSMUST00000175194 63 ntBASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Gm7213-201ENSMUST00000215977 950 ntBASIC14.66□□□□□ -0.06
Trim55G3X8Y1 AC160980.1-201ENSMUST00000224136 970 ntBASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Nudt18-202ENSMUST00000228554 3619 ntBASIC14.66□□□□□ -0.06
Trim55G3X8Y1 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Gm7002-201ENSMUST00000221386 2165 ntBASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim55G3X8Y1 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 AC155298.2-201ENSMUST00000225485 6226 ntBASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Gm20633-201ENSMUST00000176742 2831 ntBASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC14.65□□□□□ -0.06
Trim55G3X8Y1 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms