Protein–RNA interactions for Protein: E0CXC2

Gm28043, E3 ubiquitin-protein ligase RNF8, mousemouse

Predictions only

Length 719 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm28043E0CXC2 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 Mir7036b-201ENSMUST00000184791 63 ntBASIC14.35□□□□□ -0.11
Gm28043E0CXC2 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm28043E0CXC2 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 AC159295.1-201ENSMUST00000225326 940 ntBASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Gm10313-201ENSMUST00000095320 1002 ntBASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Gm37844-201ENSMUST00000192473 4097 ntBASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC14.34□□□□□ -0.11
Gm28043E0CXC2 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.11
Gm28043E0CXC2 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC14.33□□□□□ -0.11
Gm28043E0CXC2 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Gm28043E0CXC2 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Gm28043E0CXC2 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC14.33□□□□□ -0.11
Gm28043E0CXC2 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Gm28043E0CXC2 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC14.33□□□□□ -0.11
Gm28043E0CXC2 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Mir8117-201ENSMUST00000184773 107 ntBASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Gm43514-201ENSMUST00000198852 424 ntBASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Gm44945-201ENSMUST00000206764 1187 ntBASIC14.33□□□□□ -0.12
Gm28043E0CXC2 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Gm28043E0CXC2 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC14.32□□□□□ -0.12
Gm28043E0CXC2 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms