Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
Scn11aQ9R053 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn11aQ9R053 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Scn11aQ9R053 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC16.69■□□□□ 0.26
Scn11aQ9R053 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Scn11aQ9R053 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Scn11aQ9R053 AC150560.1-201ENSMUST00000227731 1187 ntBASIC16.69■□□□□ 0.26
Scn11aQ9R053 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn11aQ9R053 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn11aQ9R053 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC16.69■□□□□ 0.26
Scn11aQ9R053 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn11aQ9R053 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn11aQ9R053 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn11aQ9R053 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Scn11aQ9R053 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC16.69■□□□□ 0.26
Scn11aQ9R053 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn11aQ9R053 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC16.68■□□□□ 0.26
Scn11aQ9R053 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Gm6152-201ENSMUST00000151704 340 ntBASIC16.68■□□□□ 0.26
Scn11aQ9R053 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Gm18222-201ENSMUST00000202416 1387 ntBASIC16.68■□□□□ 0.26
Scn11aQ9R053 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn11aQ9R053 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Gm18934-201ENSMUST00000216671 1044 ntBASIC16.67■□□□□ 0.26
Scn11aQ9R053 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Scn11aQ9R053 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn11aQ9R053 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Gm12134-201ENSMUST00000122109 520 ntBASIC16.66■□□□□ 0.26
Scn11aQ9R053 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Gm5276-201ENSMUST00000196683 1047 ntBASIC16.66■□□□□ 0.26
Scn11aQ9R053 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
Scn11aQ9R053 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Scn11aQ9R053 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms