Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Smco4Q9JIS3 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 AC155729.1-201ENSMUST00000227758 544 ntBASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Smco4Q9JIS3 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Smco4Q9JIS3 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Smco4Q9JIS3 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Smco4Q9JIS3 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Smco4Q9JIS3 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Smco4Q9JIS3 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Smco4Q9JIS3 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC11.46□□□□□ -0.58
Smco4Q9JIS3 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Smco4Q9JIS3 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Gm7899-201ENSMUST00000192935 1897 ntBASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Gm27463-201ENSMUST00000183569 57 ntBASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Smco4Q9JIS3 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Smco4Q9JIS3 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Smco4Q9JIS3 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Smco4Q9JIS3 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Smco4Q9JIS3 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC11.44□□□□□ -0.58
Smco4Q9JIS3 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Smco4Q9JIS3 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Smco4Q9JIS3 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Smco4Q9JIS3 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Smco4Q9JIS3 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Smco4Q9JIS3 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms