Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Gm18733-201ENSMUST00000173950 856 ntBASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC14.14□□□□□ -0.15
Lima1Q9ERG0 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lima1Q9ERG0 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lima1Q9ERG0 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Gm45630-201ENSMUST00000210243 1911 ntBASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Gm37411-201ENSMUST00000194180 2282 ntBASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lima1Q9ERG0 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lima1Q9ERG0 AC025913.2-201ENSMUST00000220136 1766 ntBASIC14.11□□□□□ -0.15
Lima1Q9ERG0 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lima1Q9ERG0 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lima1Q9ERG0 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lima1Q9ERG0 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lima1Q9ERG0 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lima1Q9ERG0 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lima1Q9ERG0 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lima1Q9ERG0 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Lima1Q9ERG0 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms