Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Gm45630-201ENSMUST00000210243 1911 ntBASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Gm6415-201ENSMUST00000118488 348 ntBASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Gm27989-201ENSMUST00000184721 107 ntBASIC16.05■□□□□ 0.16
Ushbp1Q8R370 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC16.05■□□□□ 0.16
Ushbp1Q8R370 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 H2-Pa-201ENSMUST00000182803 626 ntBASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ushbp1Q8R370 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Gm13823-201ENSMUST00000119930 345 ntBASIC16.03■□□□□ 0.16
Ushbp1Q8R370 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ushbp1Q8R370 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Gm27306-201ENSMUST00000183970 107 ntBASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Mir8102-201ENSMUST00000184148 139 ntBASIC16.02■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 61.2 ms