Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp47Q8BY87 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC20.09■□□□□ 0.81
Usp47Q8BY87 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC20.09■□□□□ 0.81
Usp47Q8BY87 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Gm43697-201ENSMUST00000199637 2581 ntBASIC20.09■□□□□ 0.81
Usp47Q8BY87 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
Usp47Q8BY87 Gm31326-201ENSMUST00000191856 1048 ntBASIC20.08■□□□□ 0.81
Usp47Q8BY87 AC165157.4-201ENSMUST00000220587 139 ntBASIC20.08■□□□□ 0.81
Usp47Q8BY87 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Mir497b-201ENSMUST00000093601 125 ntBASIC20.08■□□□□ 0.81
Usp47Q8BY87 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Gm42471-201ENSMUST00000201457 1865 ntBASIC20.08■□□□□ 0.81
Usp47Q8BY87 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Usp47Q8BY87 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Usp47Q8BY87 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Gm4804-201ENSMUST00000182234 999 ntBASIC20.08■□□□□ 0.8
Usp47Q8BY87 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC20.08■□□□□ 0.8
Usp47Q8BY87 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC20.08■□□□□ 0.8
Usp47Q8BY87 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC20.08■□□□□ 0.8
Usp47Q8BY87 CT030704.2-201ENSMUST00000228887 494 ntBASIC20.08■□□□□ 0.8
Usp47Q8BY87 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp47Q8BY87 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp47Q8BY87 AC114543.1-201ENSMUST00000226451 1558 ntBASIC20.07■□□□□ 0.8
Usp47Q8BY87 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp47Q8BY87 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Gm5425-201ENSMUST00000214125 459 ntBASIC20.07■□□□□ 0.8
Usp47Q8BY87 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Gm43205-201ENSMUST00000198622 1968 ntBASIC20.07■□□□□ 0.8
Usp47Q8BY87 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp47Q8BY87 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Usp47Q8BY87 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp47Q8BY87 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Usp47Q8BY87 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp47Q8BY87 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp47Q8BY87 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp47Q8BY87 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms