Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm15376-201ENSMUST00000122258 783 ntBASIC18.46■□□□□ 0.55
Trim28Q62318 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC18.46■□□□□ 0.55
Trim28Q62318 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 Gm37297-201ENSMUST00000192974 2384 ntBASIC18.46■□□□□ 0.55
Trim28Q62318 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim28Q62318 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Trim28Q62318 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.54
Trim28Q62318 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Trim28Q62318 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Trim28Q62318 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC18.45■□□□□ 0.54
Trim28Q62318 AC155252.1-201ENSMUST00000226462 1208 ntBASIC18.45■□□□□ 0.54
Trim28Q62318 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim28Q62318 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC18.44■□□□□ 0.54
Trim28Q62318 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC18.44■□□□□ 0.54
Trim28Q62318 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC18.44■□□□□ 0.54
Trim28Q62318 AC155258.1-201ENSMUST00000219303 253 ntBASIC18.44■□□□□ 0.54
Trim28Q62318 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC18.44■□□□□ 0.54
Trim28Q62318 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC18.44■□□□□ 0.54
Trim28Q62318 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Trim28Q62318 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC18.44■□□□□ 0.54
Trim28Q62318 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC18.44■□□□□ 0.54
Trim28Q62318 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC18.44■□□□□ 0.54
Trim28Q62318 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
Trim28Q62318 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trim28Q62318 Gm29340-201ENSMUST00000188763 3854 ntBASIC18.44■□□□□ 0.54
Trim28Q62318 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Trim28Q62318 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC18.43■□□□□ 0.54
Trim28Q62318 Gm26464-201ENSMUST00000157094 305 ntBASIC18.43■□□□□ 0.54
Trim28Q62318 Gm8584-201ENSMUST00000171982 758 ntBASIC18.43■□□□□ 0.54
Trim28Q62318 Gm28911-201ENSMUST00000188837 117 ntBASIC18.43■□□□□ 0.54
Trim28Q62318 Gm29741-201ENSMUST00000192667 421 ntBASIC18.43■□□□□ 0.54
Trim28Q62318 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC18.43■□□□□ 0.54
Trim28Q62318 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC18.43■□□□□ 0.54
Trim28Q62318 CT030657.3-201ENSMUST00000222707 1200 ntBASIC18.43■□□□□ 0.54
Trim28Q62318 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Trim28Q62318 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Trim28Q62318 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Trim28Q62318 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim28Q62318 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim28Q62318 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim28Q62318 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim28Q62318 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim28Q62318 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trim28Q62318 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim28Q62318 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Trim28Q62318 Gm11524-201ENSMUST00000119349 807 ntBASIC18.42■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms