Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
Col8a1Q00780 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col8a1Q00780 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Col8a1Q00780 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Col8a1Q00780 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
Col8a1Q00780 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Gm6244-201ENSMUST00000178732 841 ntBASIC12.19□□□□□ -0.46
Col8a1Q00780 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Gm43179-201ENSMUST00000198797 275 ntBASIC12.19□□□□□ -0.46
Col8a1Q00780 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.19□□□□□ -0.46
Col8a1Q00780 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Col8a1Q00780 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Gm9816-201ENSMUST00000122292 1414 ntBASIC12.19□□□□□ -0.46
Col8a1Q00780 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col8a1Q00780 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC12.18□□□□□ -0.46
Col8a1Q00780 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.18□□□□□ -0.46
Col8a1Q00780 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC12.18□□□□□ -0.46
Col8a1Q00780 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC12.18□□□□□ -0.46
Col8a1Q00780 Gm45098-201ENSMUST00000207179 657 ntBASIC12.18□□□□□ -0.46
Col8a1Q00780 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC12.18□□□□□ -0.46
Col8a1Q00780 Gm7446-201ENSMUST00000221035 1240 ntBASIC12.18□□□□□ -0.46
Col8a1Q00780 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 AC139580.1-202ENSMUST00000223574 928 ntBASIC12.18□□□□□ -0.46
Col8a1Q00780 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC12.18□□□□□ -0.46
Col8a1Q00780 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC12.18□□□□□ -0.46
Col8a1Q00780 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Col8a1Q00780 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 AC154412.1-201ENSMUST00000226540 2786 ntBASIC12.17□□□□□ -0.46
Col8a1Q00780 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC12.17□□□□□ -0.46
Col8a1Q00780 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Col8a1Q00780 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Col8a1Q00780 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Col8a1Q00780 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms