Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm7553-201ENSMUST00000185805 1426 ntBASIC12.73□□□□□ -0.37
Col5a1O88207 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Col5a1O88207 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC12.73□□□□□ -0.37
Col5a1O88207 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col5a1O88207 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col5a1O88207 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col5a1O88207 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col5a1O88207 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC12.73□□□□□ -0.37
Col5a1O88207 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC12.72□□□□□ -0.37
Col5a1O88207 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Gm7993-201ENSMUST00000200970 1384 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC12.72□□□□□ -0.37
Col5a1O88207 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC12.72□□□□□ -0.37
Col5a1O88207 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC12.72□□□□□ -0.37
Col5a1O88207 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC12.72□□□□□ -0.37
Col5a1O88207 Gm24644-201ENSMUST00000157114 139 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Gm2445-201ENSMUST00000182798 989 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Gm27516-201ENSMUST00000184237 98 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Gm45930-201ENSMUST00000221330 292 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Mir497b-201ENSMUST00000093601 125 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC12.72□□□□□ -0.37
Col5a1O88207 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Gm12620-201ENSMUST00000119791 1986 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Gm12612-201ENSMUST00000140182 1986 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC12.72□□□□□ -0.37
Col5a1O88207 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC12.72□□□□□ -0.37
Col5a1O88207 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Gm22018-201ENSMUST00000104357 131 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Col5a1O88207 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Gm12485-201ENSMUST00000119641 291 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC12.72□□□□□ -0.37
Col5a1O88207 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 Gm7783-201ENSMUST00000204795 781 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC12.72□□□□□ -0.37
Col5a1O88207 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col5a1O88207 AC155637.1-201ENSMUST00000218560 636 ntBASIC12.72□□□□□ -0.37
Col5a1O88207 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 AC114543.1-201ENSMUST00000226451 1558 ntBASIC12.71□□□□□ -0.37
Col5a1O88207 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC12.71□□□□□ -0.37
Col5a1O88207 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.71□□□□□ -0.37
Col5a1O88207 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC12.71□□□□□ -0.37
Col5a1O88207 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col5a1O88207 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.37
Col5a1O88207 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC12.71□□□□□ -0.38
Col5a1O88207 Gm15376-201ENSMUST00000122258 783 ntBASIC12.71□□□□□ -0.38
Col5a1O88207 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
Col5a1O88207 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col5a1O88207 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.38
Col5a1O88207 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC12.71□□□□□ -0.38
Col5a1O88207 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.71□□□□□ -0.38
Col5a1O88207 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
Col5a1O88207 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col5a1O88207 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col5a1O88207 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col5a1O88207 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col5a1O88207 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col5a1O88207 AC159196.2-201ENSMUST00000224082 1622 ntBASIC12.71□□□□□ -0.38
Col5a1O88207 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col5a1O88207 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col5a1O88207 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col5a1O88207 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col5a1O88207 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col5a1O88207 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col5a1O88207 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Col5a1O88207 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col5a1O88207 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col5a1O88207 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col5a1O88207 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col5a1O88207 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Col5a1O88207 Gm15429-201ENSMUST00000151268 798 ntBASIC12.7□□□□□ -0.38
Col5a1O88207 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col5a1O88207 Gm40466-201ENSMUST00000212174 422 ntBASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms