Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm29361-201ENSMUST00000183323 2000 ntBASIC11.86□□□□□ -0.51
Hmgb3O54879 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC11.85□□□□□ -0.51
Hmgb3O54879 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC11.85□□□□□ -0.51
Hmgb3O54879 AC157650.3-201ENSMUST00000225058 1476 ntBASIC11.85□□□□□ -0.51
Hmgb3O54879 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC11.85□□□□□ -0.51
Hmgb3O54879 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC11.85□□□□□ -0.51
Hmgb3O54879 Gm15165-201ENSMUST00000118140 502 ntBASIC11.85□□□□□ -0.51
Hmgb3O54879 Gm29518-201ENSMUST00000190858 372 ntBASIC11.85□□□□□ -0.51
Hmgb3O54879 Ighv6-1-201ENSMUST00000193612 343 ntBASIC11.85□□□□□ -0.51
Hmgb3O54879 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Hmgb3O54879 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC11.85□□□□□ -0.51
Hmgb3O54879 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC11.85□□□□□ -0.51
Hmgb3O54879 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Hmgb3O54879 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC11.85□□□□□ -0.51
Hmgb3O54879 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
Hmgb3O54879 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC11.85□□□□□ -0.51
Hmgb3O54879 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Hmgb3O54879 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Hmgb3O54879 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Ssr1-204ENSMUST00000225319 1610 ntBASIC11.84□□□□□ -0.51
Hmgb3O54879 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Hmgb3O54879 Ntrk2-208ENSMUST00000225583 2719 ntBASIC11.84□□□□□ -0.51
Hmgb3O54879 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hmgb3O54879 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC11.83□□□□□ -0.51
Hmgb3O54879 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Hmgb3O54879 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Hmgb3O54879 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.51
Hmgb3O54879 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC11.83□□□□□ -0.51
Hmgb3O54879 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC11.83□□□□□ -0.52
Hmgb3O54879 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Hmgb3O54879 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Gm38197-201ENSMUST00000192320 2122 ntBASIC11.83□□□□□ -0.52
Hmgb3O54879 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Hmgb3O54879 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Hmgb3O54879 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC11.83□□□□□ -0.52
Hmgb3O54879 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms